Importing Geometry

After importing a model, the next step is to import an image of the compartments in the model. To do this, go to Import->Geometry from image, or choose one of the built-in example images from Import->Example geometry image.

The image should be segmented such that each compartment has a unique colour.

For each compartment in the model:

  • click on the compartment name
  • click on “Select compartment geometry…”
  • then click on the desired part of the image.
screenshot showing geometry settings

An example of importing a geometry image, and then assigning each compartment to a region in the image.