spatial-model-editor

Getting started

Setting the stage
Find your bearings
Importing Geometry
Assign Compartments
Mesh generation
Species properties
Defining reactions
Defining parameters
Defining additional functions
Running a Simulation

Example models

Overview
Single compartment diffusion
AB-to-C Reaction model
Gray Scott
A very simple model
Brusselator model
Liver cells
Circadian clock
Simplified liver model
Sel’Kov Model
FitzHugh-Nagumo
Calcium-Wave-Propagation Model

User guides

Work with SBML and COPASI models
How to create your own geometry

Python interface

Python Interface
Example Notebooks
API Reference
- sme

Reference documentation

dune-copasi simulator
Pixel simulator
Parameter optimization
Steady state analysis
Mesh generation
Command Line Interface
Maths
Units
Changelog
Source Code
License

Developer documentation

Core
Pixel
Tests

Documentation

spatial-model-editor

API Reference
sme
sme.SimulationOptions
View page source

sme.SimulationOptions

class sme.SimulationOptions(*args, **kwargs)

Methods

__init__(self)

Attributes

`dune`	(self) -> sme.DuneOptions
`pixel`	(self) -> sme.PixelOptions

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© Copyright 2019, Liam Keegan.

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