sme.Species

class sme.Species

a species that lives in a compartment

Methods

__init__(*args, **kwargs)

Attributes

analytic_concentration

the initial concentration of this species as an analytic_2d expression

concentration_image

the initial concentration of this species as a 3d array of floats, one for each voxel in the geometry image

concentration_type

the type of initial concentration of this species (Uniform, Analytic or Image)

diffusion_constant

the diffusion constant of this species

name

the name of this species

uniform_concentration

the uniform initial concentration of this species as a float