sme.Species

class sme.Species

a species that lives in a compartment

Methods

__init__(*args, **kwargs)

Attributes

analytic_concentration	the initial concentration of this species as an analytic_2d expression
analytic_diffusion	the diffusion constant of this species as an analytic expression
concentration_image	the initial concentration of this species as a 3d array of floats, one for each voxel in the geometry image
concentration_type	the type of initial concentration of this species (Uniform, Analytic or Image)
diffusion_constant	the diffusion constant of this species
diffusion_image	the diffusion constant of this species as a 3d array of floats, one for each voxel in the geometry image
diffusion_type	the type of diffusion constant of this species (Uniform, Analytic or Image)
name	the name of this species
uniform_concentration	the uniform initial concentration of this species as a float
uniform_diffusion	the uniform diffusion constant of this species