Running a Simulation
To simulate the spatial model, click on the “Simulate” tab, specify the simulation time and desired interval between images, then click “Simulate”.
The default simulation type is DUNE, a high-quality FEM solver, which solves the PDE on the triangular meshed approximation of the geometry.
The other alternative is Pixel, a simple FTCS solver, which solves the PDE on the grid formed by the pixels of the geometry image.
The simulation type can be chosen by clicking on Tools->Set simulation type.
The resulting average species concentrations are plotted as a function of time. A snapshot of the spatial distribution is shown on the left, and the slider below the plot can be used to change the time that is being displayed. A 1d slice of the image as a function of time can also be generated.