Example Notebooks

• Getting started
  • Install and import sme
  • Importing a model
  • Getting help
  • Viewing model contents
    • Iterating over compartments
    • Get compartment by name
    • Get compartment by list index
    • Display geometry of compartments
    • Display parameter names and values
  • Editing model contents
    • Names
    • Model Parameters
    • Reaction Parameters
    • Species Initial Concentrations
  • Exporting a model
• Simulating
  • Open an example model
  • Running a simulation
    • Display images from simulation results
    • Plot concentrations from simulation results
    • Plot average/min/max species concentrations
  • Diffusion constant example
• Visualization
  • Open an example model & simulate
  • Animation of species concentrations
  • Gray-Scott Model