sme.Model

class sme.Model(*args, **kwargs)

the spatial model

Attributes

compartment_image

an image of the compartments in this model

compartments

the compartments in this model

export_sbml_file

exports the model as a spatial SBML file

export_sme_file

exports the model as a sme file

import_geometry_from_image

sets the geometry of each compartment to the corresponding pixels in the supplied geometry image

membranes

the membranes in this model

name

the name of this model

parameters

the parameters in this model

simulate

Overloaded function.

simulation_results

returns the simulation results.