sme

Spatial Model Editor Python interface

Python bindings to a subset of the functionality available in the full GUI Spatial Model Editor

https://spatial-model-editor.readthedocs.io/

Classes

Compartment	a compartment where species live
CompartmentList(*args, **kwargs)	a list of Compartment objects
DuneDiscretizationType(*values)
DuneOptions(*args, **kwargs)
Membrane	a membrane where two compartments meet
MembraneList(*args, **kwargs)	a list of Membrane objects
Model(*args, **kwargs)	the spatial model
Parameter	a parameter of the model
ParameterList(*args, **kwargs)	a list of Parameter objects
PixelBackendType(*values)
PixelIntegratorError(*args, **kwargs)
PixelIntegratorType(*values)
PixelOptions(*args, **kwargs)
Reaction	a reaction between species
ReactionList(*args, **kwargs)	a list of Reaction objects
ReactionParameter	a parameter of a reaction
ReactionParameterList(*args, **kwargs)	a list of ReactionParameter objects
SimulationOptions(*args, **kwargs)
SimulationResult	results at a single timepoint of a simulation
SimulationResultList(*args, **kwargs)	a list of SimulationResult objects
SimulationSettings(*args, **kwargs)	simulation settings used by Model.simulate()
SimulatorType(*values)
SpatialDataType(*values)
Species	a species that lives in a compartment
SpeciesList(*args, **kwargs)	a list of Species objects