sme

Spatial Model Editor Python interface

Python bindings to a subset of the functionality available in the full GUI Spatial Model Editor

Functions

`open_example_model`(name)	opens a built in example spatial model
`open_file`(filename)	opens a sme or SBML file containing a spatial model
`open_sbml_file`(filename)	opens an SBML file containing a spatial model

Classes

`Compartment`	a compartment where species live
`CompartmentList`	a list of `Compartment` objects
`ConcentrationType`	Members:
`Membrane`	a membrane where two compartments meet
`MembraneList`	a list of `Membrane` objects
`Model`	the spatial model
`Parameter`	a parameter of the model
`ParameterList`	a list of `Parameter` objects
`Reaction`	a reaction between species
`ReactionList`	a list of `Reaction` objects
`ReactionParameter`	a parameter of a reaction
`ReactionParameterList`	a list of `ReactionParameter` objects
`SimulationResult`	results at a single timepoint of a simulation
`SimulationResultList`	a list of `SimulationResult` objects
`SimulatorType`	Members:
`Species`	a species that lives in a compartment
`SpeciesList`	a list of `Species` objects

Exceptions

`InvalidArgument`
`RuntimeError`