sme

Spatial Model Editor Python interface

Python bindings to a subset of the functionality available in the full GUI Spatial Model Editor

https://spatial-model-editor.readthedocs.io/

Classes

Compartment

a compartment where species live

CompartmentList(*args, **kwargs)

a list of Compartment objects

ConcentrationType(value[, names, module, ...])

Membrane

a membrane where two compartments meet

MembraneList(*args, **kwargs)

a list of Membrane objects

Model(*args, **kwargs)

the spatial model

Parameter

a parameter of the model

ParameterList(*args, **kwargs)

a list of Parameter objects

Reaction

a reaction between species

ReactionList(*args, **kwargs)

a list of Reaction objects

ReactionParameter

a parameter of a reaction

ReactionParameterList(*args, **kwargs)

a list of ReactionParameter objects

SimulationResult

results at a single timepoint of a simulation

SimulationResultList(*args, **kwargs)

a list of SimulationResult objects

SimulatorType(value[, names, module, ...])

Species

a species that lives in a compartment

SpeciesList(*args, **kwargs)

a list of Species objects